Yumi overhears that a promotion for Takagi will send him to a case in a far away place where he shall remain there until the case is solved. Apparently the case involves a large number of people in a crime organization, where he is expected to be there for three years. Later the Detecitve Boys are walking home when they noticed a strange jogger. Takagi, Sato, and Chou are placed on the case of a murder. The Detective Boys come across them and identify the jogger as the suspect. When they arrive, the suspect's allibi of video recordings proves he was there the whole time the murder took place, but the Detective Boys are certain he was the jogger. What's more, the allibi is confirmed by Officer Chiba, since it's his roommate.

Conan discovers that the suspect tricked Chiba's sense of time. He revealed that there was a re-air of the news, and it was dubbed. He also revealed that the culprit cut out parts and fast forwarded parts of the video to manipulate time. He also spun the time two hours behind, and slowly fixed it as the day dragged on. Afterwards, Takagi almost proposes to Sato but Megure reveals to him Chou Takagi is the one being sent for the case. They later take the Detective Boys to Karaoke.

The president of a construction company has been stabbed, but the prime suspect is too short to have stabbed him from the knife angle!

A motorcyclist crashes and dies outside of the Mouri Detective Agency. Oddly, the rider had over 300,000 yen on his person. A note on the rider suggests it was money for a ransom!

While the Detective Boy’s are camping, they discover a lantern on a pond with a code for a diamond that Kaitou Kid is also looking for! They also discover something beneath the lantern.

The Detective Boy’s enter a house made filled with traps. While inside, they run into several treasure hunters in search of the diamond as well.

Conan and the Detective Boys try to avoid traps while following clues to the diamond. One of the treasure hunters is Kaitou Kid in disguise!

A woman has been found dead in her bathroom in an apparent suicide, but her friend claims it is murder!

A woman asks Kogoro to find her missing cellphone. She suspects that someone in her household is using it to find information about her affair. Although she manages to find the cellphone, the plot deepens when the woman is suddenly found dead.

The suspects are her husband, her brother in law, and the person she is having an affair with. They all have alibis. The clues to this mystery involve the cellphone and the mysterious bell ringing. Later Conan solves the case, revealing that a missing person created the culprit's allibi.

It was the beginning of the night at midnight that Conan, Ran, and Kogoro have dinner at midnight. After the meal, Conan went to bed, and Ran asks him to brush his teeth before going to bed. She has now became suspicious that Conan is Shin'ichi. She went to the office to check on Conan's cellphone. Ran decided to check for mail in the phone so that she would know that Conan is Shinichi. She typed every pin code in the cellphone, but didn't work. Ran begins to remember what code Shinichi choose. Ran began to type the code 5545, but couldn't. She realized that Shinichi has to choose what code it is. After discovering that the mail isn't there, Ran decided to send it, but couldn't. Just then, she gets a call from Shinichi, who questions her why is she keep sending the mail over and over again. Rachel begins to forget that Conan is Shinichi. In Conan's room, it was revealed that he hides his real cellphone in the bucket.

Takagi is in a jewelry store when it is robbed. He chases the thief out onto the roof!

The thief jumps off the room, apparently killing himself, but Conan notices something strange about the incident leading him to question the police’s deduction.

The Detective Boy’s have 24 hours to help a girl solve a riddle for her inheritance: "When the bull loses its horns, and his tail becomes his head. The angel will come down and play the horn. That melody is my treasure."

While solving the first part of the riddle, the Detective Boys are trapped in a labyrinth. Will they solve the riddle in time?

One day a man was jogging and finds a dead body. He calls the Ambulance but worried about the mans life, decides to run to the nearest bus station. Because of his actions he is considered the main suspect. Takagi comes to the case and with Conan's help, solves the case. He proves the mans innocence and captures the culprit. It turns out the Manger's dying message was for the culprit saying he should always try and smile.

Conan, Heiji, Ran, and Kazuha are at a magic show. When the magician enters a cube of water with chains, something goes wrong and Ran and Kazuha rush to the stage ready to break it open. The magician escapes revealing it was part of the trick. Ran and Kazuha are invited to come to a party with the Magician. At the party, there are magicians there who were the fans of a famous magician. When there, a murder happens.

Conan and Heiji investigate and the magicians back stories are given more indept. Heiji tells Conan that he feels angry seeing Kazuha with another man for some reason with Conan calling Heiji child like afterwards.

The mystery is solved and Heiji shows that it involves how the house is built. They reveal the hallway has mirrors on the door with identical rooms on the side to cause an illusion.

Conan and the others are participating in a theatre show, but when the day of the performance comes, a key person is missing!

While staging a kidnapping, a real kidnapping occurs! Will the play be able to go on?!

The detective boys are hiking on a trip to find stag beetles on a mountain forest. Later Conan receives a phone call from Ran and Sonoko who tells "Shinichi" that a burglar tried to steal Sonoko's bag. Since it relates to a murder, Conan investigates a picture sent by Sonoko to learn about the dying message. While at it, he helps the Detective Boys solve one of Agasa's code.

Later Conan solves both codes and finds out that Ran and Sonoko are riding with the murderer. The culprit tries to kill them but Ran knocks him out. Later, Conan's picture of Ran is deleted by the Detective Boys who believe he should not have access to those kind of materials.

While on set for a Detective show, one of the scriptwriters is murdered! The suspect is obvious, but there is a lack of clear proof.

The Detective Boy’s investigate a girl’s bird, which has begun to act strangely. However, that is not the only strange thing going on in her house.

A man is being haunted by a ghost, since exorcisms did not work they want Moore to solve the case. The clue is a card that says the fifth ghost will kill them unless they repent their sins. Since the time that card was sent, the master installed a door that needs a pin code and fingerprint scan to access the top floor. The master, lady, and the installer of the door are friends who are hiding a secret about the sin. All the accidents happen on Butsumetsu day, the day Buddha dies and the unluckiest day on Earth. On that day the installer was found hanged on the balcony of the third floor. The master was not home so the door could not have been opened.

Afterwards, the master is found dead from a heart attack. Conan realizes he must've seen something that was impossible causing him that much of a fright.

They decide to investigate the four workers of the mansion along with the accident that took place thirteen years ago. Conan realizes that a twin who was supposed to be long dead was involved, and that was what scared the manager. It was revealed that on the wristwatch of the dying victim, was the location of where the boat accident happened.

A small three-story house is put up for rent in the neighbourhood and the Detective Boys decide to pass by it on the way home from school. Haibara tricks the real estate agent into giving them a tour of the inside and Conan notices you could see Mori's detective agency from the third floor window. The next day, they discover the house has been sold to an old couple and Conan finds them suspicious. He follows the old man to China town and into a back alley shop where he is discovered, but manages to flee. Conan takes a nap upon coming home and a man in black enters with a gun and shoots him. The old woman rushes to the agency calling out for Shinichi who Conan greets as his mother and the old man enters to reveal himself as Conan's father. It turns out, Shinichi's parents just wanted to find out if he really was doing okay in his current life.

While at the mythical village of Izumo Conan, Kogoro, and Ran meet a woman about to marry a terrible businessman. The businessman turns up dead and she, among her childhood friend are suspects!

Conan does not believe Eiko and Fukuma’s alibis but are they guilty or protecting something.

The Detective Boys are at Agasa's house when they happen to find a letter from Agasa's first love. Apparently they are supposed to meet every decade but was unable to because Agasa could not solve the code from the letter. The Detective Boys set out to solve it and find the "memorable place" using the hint given in the letter. The clues lead them to the zoo where Agasa see's a brown hair women.

The woman turns out to be another classmate, previously a male but now a female. After Conan re-examines the hint, he realizes that the sounds were animal noises pronounced by the English. After finding her, she leaves pretending not to know Agasa, believing the Detective Boys were his grandchildren and that she was intruding his happy family. Agasa reveals he knows it is her as she drives away.

Takagi and Sato are investigating a murder, but a witness will not admit what they saw for fear of being punished. It is up to the Detective Boys to convince him.

Mouri, and Conan are checking out costumes for Mouri's one day of being a chief firemen. Later they meet people attending a costume party. While walking home, they find a police car in front of the house and meet the people from the costume shop earlier, realizing the host has been murdered. Conan realizes that the culprit must've interfered with the Rigor Mortis and finds the evidence to convict the culprit. The culprit reveals that the host was his controlling girlfriend.

Yoko introduced Conan, Ran, and Kogoro to a newscaster named Rena Mizunashi who has experiences persistent "doorbell" pranks. Conan planted a tracker to figure out the culprit, but after the case, the track gets stuck to Rena's shoe. Conan hears the same melody that he heard when Vermouth was calling the boss, and finds out that she's calling Gin. Rena Mizunashi is no other than Kir, a new member of the organization, and on top of that, Gin has recruited two new members named Chianti and Korn for an assassinaton! Conan must team up with the FBI to stop them.

Ran receives an anonymous "love" letter that has Conan worried.